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Publications

  1. Center for Medical Physics and Biomedical Engineering
  2. Research
  3. Projects
  4. European Innovation Council Pathfinder Project CITRUS
  5. Publications

Publications

  1. Murphy KR, Nandi T, Kop B, Osada T, Lueckel M, N’Djin WA, Caulfield KA, Fomenko A, Siebner HR, Ugawa Y, Verhagen L, Bestmann S, Martin E, Butts Pauly K, Fouragnan E, Bergmann TO. A practical guide to transcranial ultrasonic stimulation from the IFCN-endorsed ITRUSST consortium. Clin Neurophysiol. 2025 Feb;171:192–226. doi: 10.1016/j.clinph.2025.01.004. Available at: https://zenodo.org/records/16418180
  2. Nohava L, Obermann M, Frass-Kriegl R, Soanca O, Laistler E. A modular system of flexible receive-only coil arrays for 3 T Magnetic Resonance Imaging. Z Med Phys. 2023 May 29:S0939-3889(23)00070-3. doi: 10.1016/j.zemedi.2023.05.002. Available at: https://zenodo.org/records/16418128
  3. Martin E, Aubry JF, Schafer M, Verhagen L, Treeby B, Butts Pauly K. ITRUSST consensus on standardised reporting for transcranial ultrasound stimulation. Brain Stimulation 2024;17(3):607-615. doi: 10.1016/j.brs.2024.04.013. Available at: https://zenodo.org/records/16418416
  4. Obermann M, Nohava L, Frass-Kriegl R, Soanca O, Ginefri JC, Felblinger J, Clauser P, Baltzer PAT, Laistler E. Panoramic Magnetic Resonance Imaging of the Breast With a Wearable Coil Vest. Invest Radiol. 2023 Nov 1;58(11):799-810. doi: 10.1097/RLI.0000000000000991. Available at: https://zenodo.org/records/16411741
  5. Bayer D, Jaros J. Acceleration of Heat Diffusion Simulation on Single-Node Systems. Proceedings of the 6th Users' Conference of IT4Innovations. 2023 Oct 30-31; Ostrava, Czech Republic. Zenodo; doi: 10.5281/zenodo.14417460. Available at: https://zenodo.org/records/14417460
  6. Jaros J, Duchon R. Acceleration of Ultrasound Neurostimulation Using Mixed-Precision Arithmetic. Proceedings of the 33rd International Symposium on High-Performance Parallel and Distributed Computing. New York, NY: Association for Computing Machinery; 2024 Aug 30. p. 370–372. doi: 10.1145/3625549.3658823. Available at: https://zenodo.org/records/16418465
  7. Sigurðsson B, Nielsen JD, Puonti O, Iglesias JE, Thielscher A. Bone density prediction from any head MRI. Proceedings of the 8th ISMRM Nordic Chapter Annual Meeting. 2024 August 22-23; Turku, Finland. doi: 10.5281/zenodo.14333423. Available at: https://zenodo.org/records/14333423
  8. Olsak O, Jaros J. Evaluation of Libraries for the One-Dimensional Sparse Fourier Transform. Proceedings of the 6th Users' Conference of IT4Innovations. 2022 Nov 3-4; Ostrava, Czech Republic. Zenodo; doi: 10.5281/zenodo.14333714. Available at: https://zenodo.org/records/14333714
  9. Olsak O, Jaros J. Investigating the possibility of using pruned FFT in ultrasound wave propagation simulations. Proceedings of the 8th Users' Conference of IT4Innovations; 2024 Nov 4-5; Ostrava, Czech Republic. Available at: https://zenodo.org/records/16418530
  10. Hodono S, Marques J, Norris D. Investigating the stability of thermal and physiological noise in phase domain using NORDIC for low-intensity MR-Acoustic Radiation Force Imaging (ARFI) in humans. Proceedings of the European Society for Magnetic Resonance in Medicine and Biology. 2024 Oct 2-5; Barcelona, Spain. Zenodo; 2024 Nov 18. doi: 10.5281/zenodo.14179297. Available at: https://zenodo.org/records/14179297
  11. Olsak O, Jaros J. On the Usage of the Sparse Fourier Transform in Ultrasound Propagation Simulation. Proceedings of the 2023 10th International Conference on Bioinformatics Research and Applications. New York, NY, USA: Association for Computing Machinery; 2024 Feb 27:107-113. doi: 10.1145/3632047.3632064. Available at: https://zenodo.org/records/16418569
  12. Jaros J, Jaros M and Buchta M. Prediction of Distributed Ultrasound Simulation Execution Time Using Machine Learning. Proceedings of the 2024 IEEE Congress on Evolutionary Computation (CEC). Yokohama, Japan, 2024, pp. 1-8. doi: 10.1109/CEC60901.2024.10611947. Available at: https://zenodo.org/records/16418588
  13. Campilho B, Hewener H, Arbabi A, Grosshagauer S, Risser C, van den Heuvel D, Marques J, Degel C, Tretbar S, Norris D, Windischberger C. Steerable transcranial ultrasound stimulation (TUS) validated by acoustic radiation force imaging. Proceedings of the Organization for Human Brain Mapping. 2024 Jun 23-27; Seoul, South Korea. Zenodo; 2024 Nov 21. doi: 10.5281/zenodo.14197941. Available at: https://zenodo.org/records/14197941
  14. Olsak O, Jaros J. Techniques for Efficient Fourier Transform Computation in Ultrasound Simulations. Proceedings of the 33rd International Symposium on High-Performance Parallel and Distributed Computing. New York, NY: Association for Computing Machinery; 2024 Aug 30. p. 361–363. doi: 10.1145/3625549.3658825. Available at: https://zenodo.org/records/16418660
  15. Campilho B, Grosshagauer S, Hewener H, Arbabi A, Risser C, Marques J, Soanca O, Degel C, van den Heuvel D, Nohava L, Hodono S, Laistler E, Tretbar S, Norris D, Windischberger C. Towards online assessment of Transcranial Ultrasound Stimulation foci: processing pipeline for MR-ARFI. Proceedings of the European Society for Magnetic Resonance in Medicine and Biology. 2024 Oct 2-5; Barcelona, Spain. Zenodo; 2024 Nov 7. doi: 10.5281/zenodo.14051478. Available at: https://zenodo.org/records/14051478 
  16. Jaros M, Jaros J. k-Dispatch: Enabling Cost-Optimized Biomedical Workflow Offloading. Proceedings of the 33rd International Symposium on High-Performance Parallel and Distributed Computing. New York: Association for Computing Machinery, 2024 Aug 20, pp. 358-360. doi: 10.1145/3625549.3658828. Available at: https://zenodo.org/records/16418673