Publications
Olsak O, Jaros J. Investigating the possibility of using pruned FFT in ultrasound wave propagation simulations. Proceedings of the 8th Users' Conference of IT4Innovations; 2024 Nov 4-5; Ostrava, Czech Republic. Available from: https://www.fit.vut.cz/research/publication-file/13259/IT4I_8th_User_conference.pdf.
Campilho B, Grosshagauer S, Hewener H, Arbabi A, Risser C, Marques J, Soanca O, Degel C, van den Heuvel D, Nohava L, Hodono S, Laistler E, Tretbar S, Norris D, Windischberger C. Towards online assessment of Transcranial Ultrasound Stimulation foci: processing pipeline for MR-ARFI. Proceedings of the European Society for Magnetic Resonance in Medicine and Biology. 2024 Oct 2-5; Barcelona, Spain. Zenodo; 2024 Nov 7. doi: 10.5281/zenodo.14051478.
Hodono S, Marques J, Norris D. Investigating the stability of thermal and physiological noise in phase domain using NORDIC for low-intensity MR-Acoustic Radiation Force Imaging (ARFI) in humans. Proceedings of the European Society for Magnetic Resonance in Medicine and Biology. 2024 Oct 2-5; Barcelona, Spain. Zenodo; 2024 Nov 18. doi: 10.5281/zenodo.14179297.
Sigurðsson B, Nielsen JD, Puonti O, Iglesias JE, Thielscher A. Bone density prediction from any head MRI. Proceedings of the 8th ISMRM Nordic Chapter Annual Meeting. 2024 August 22-23; Turku, Finland. doi: 10.5281/zenodo.14333423
Jaros J, Duchon R. Acceleration of Ultrasound Neurostimulation Using Mixed-Precision Arithmetic. Proceedings of the 33rd International Symposium on High-Performance Parallel and Distributed Computing. New York, NY: Association for Computing Machinery; 2024 Aug 30. p. 370–372. doi: https://doi.org/10.1145/3625549.3658823.
Olsak O, Jaros J. Techniques for Efficient Fourier Transform Computation in Ultrasound Simulations. Proceedings of the 33rd International Symposium on High-Performance Parallel and Distributed Computing. New York, NY: Association for Computing Machinery; 2024 Aug 30. p. 361–363. doi: https://doi.org/10.1145/3625549.3658825.
Jaros M, Jaros J. k-Dispatch: Enabling Cost-Optimized Biomedical Workflow Offloading. Proceedings of the 33rd International Symposium on High-Performance Parallel and Distributed Computing. New York: Association for Computing Machinery, 2024 Aug 20, pp. 358-360. doi: 10.1145/3625549.3658828.
Jaros J, Jaros M, Buchta M. Estimation of Distributed Ultrasound Simulation Execution Time Using Machine Learning. 2024 IEEE Congress on Evolutionary Computation. Yokohama: Institute of Electrical and Electronics Engineers; 2024 Aug 08. p. 1–8. doi: 10.1109/CEC60901.2024.10611947.
Campilho B, Hewener H, Arbabi A, Grosshagauer S, Risser C, van den Heuvel D, Marques J, Degel C, Tretbar S, Norris D, Windischberger C. Steerable transcranial ultrasound stimulation (TUS) validated by acoustic radiation force imaging. Proceedings of the Organization for Human Brain Mapping. 2024 Jun 23-27; Seoul, South Korea. Zenodo; 2024 Nov 21. doi: 10.5281/zenodo.14197941.
Martin E, Aubry JF, Schafer M, Verhagen L, Treeby B, Butts Pauly K. ITRUSST consensus on standardised reporting for transcranial ultrasound stimulation. Brain Stimul. 2024;17(3):607-615. doi: 10.1016/j.brs.2024.04.013
Jaros M, Treeby BE, Jaros J. k-Plan: from the hospital to the cluster and back. Proceedings of SupercomputingAsia; 2024 Feb 19-22; Sydney, Australia. Available from: https://www.fit.vut.cz/research/publication-file/13159/poster-scasia-2024.pdf.
Olsak O, Jaros J. On the Usage of the Sparse Fourier Transform in Ultrasound Propagation Simulation. Proceedings of the 2023 10th International Conference on Bioinformatics Research and Applications. New York, NY, USA: Association for Computing Machinery; 2024 Feb 27:107-113. doi: 10.1145/3632047.3632064.
Jaros J. MPI Error Checker; Software Package for Reporting Errors in Distributed MPI Applications [software]. 2024 Jan 1. Available from: https://github.com/jarosjir/MPIErrorChecker.
Olsak O, Jaros M, Jaros J. System for managing HPC-Services and Workflow Executions. Proceedings of the 6th Users' Conference of IT4Innovations. 2023 Oct 30-31; Ostrava, Czech Republic.
Bayer D, Jaros J. Acceleration of Heat Diffusion Simulation on Single-Node Systems. Proceedings of the 6th Users' Conference of IT4Innovations. 2023 Oct 30-31; Ostrava, Czech Republic. Zenodo; doi: 10.5281/zenodo.14417460.
Petermann V, Windischberger C. Report on portfolio activities. 2023 Sep 30. Available from: https://cordis.europa.eu/project/id/101071008/results.
Norris D. MR-ARFI phantom tests. 2023 Sep 30. Available from: https://cordis.europa.eu/project/id/101071008/results.
Windischberger C. Data Management Plan. 2023 Mar 27. Available from: https://cordis.europa.eu/project/id/101071008/results.
Nohava L, Obermann M, Frass-Kriegl R, Soanca O, Laistler E. A modular system of flexible receive-only coil arrays for 3 T Magnetic Resonance Imaging. Z Med Phys. 2023 May 29:S0939-3889(23)00070-3. doi: 10.1016/j.zemedi.2023.05.002. Epub ahead of print. PMID: 37258388.
Obermann M, Nohava L, Frass-Kriegl R, Soanca O, Ginefri JC, Felblinger J, Clauser P, Baltzer PAT, Laistler E. Panoramic Magnetic Resonance Imaging of the Breast With a Wearable Coil Vest. Invest Radiol. 2023 Nov 1;58(11):799-810. doi: 10.1097/RLI.0000000000000991. Epub 2023 May 27. PMID: 37227137; PMCID: PMC10581436.
Woletz M, Windischberger C, Arnold S. Navigation accuracy assessment report. 2023 Feb 28. Available from: https://cordis.europa.eu/project/id/101071008/results.
Olsak O, Jaros J. Evaluation of Libraries for the One-Dimensional Sparse Fourier Transform. Proceedings of the 6th Users' Conference of IT4Innovations. 2022 Nov 3-4; Ostrava, Czech Republic. Zenodo; doi: 10.5281/zenodo.14333714.
Petermann V, Windischberger C. Public project website. 2022 Nov 30. Available from: https://cordis.europa.eu/project/id/101071008/results.